Scripts/Correct Write Up Data Script.R

In OJWatson/sims4: Epidemic generational simualator

BEAST_R0_Full(dir="C:/Users/Oliver/Google Drive/Academic Work/Imperial/O15-12/Write Ups/Data/G_NoO/",
              t.cont=TRUE,withinhost=FALSE,fixed.offspring=FALSE,fixed.generations=FALSE,outgroup=FALSE,prob=FALSE,
              N=1000,n.tips=50,sample.reps=5,tree.reps=10, size.reps=c(0,10,1,0.1),sigma.reps=c(1,5,9,13,18),
              fasta.file=NULL,mu=1e-4,R0=2,Tg=2.6,bs=TRUE,random=FALSE, oldestboolean=TRUE,
              network.path=network,discretised=FALSE,proportional=FALSE)

BEAST_R0_Full(dir="C:/Users/Oliver/Google Drive/Academic Work/Imperial/O15-12/Write Ups/Data/WH_NoO/",
              t.cont=TRUE,withinhost=TRUE,fixed.offspring=FALSE,fixed.generations=FALSE,outgroup=FALSE,prob=FALSE,
              N=1000,n.tips=50,sample.reps=5,tree.reps=10, size.reps=c(0,10,1,0.1),sigma.reps=c(1,5,9,13,18),
              fasta.file=NULL,mu=1e-4,R0=2,Tg=2.6,bs=TRUE,random=FALSE, oldestboolean=TRUE,
              network.path=network,discretised=FALSE,proportional=FALSE)

BEAST_R0_Full(dir="C:/Users/Oliver/Google Drive/Academic Work/Imperial/O15-12/Write Ups/Data/G_O/",
              t.cont=TRUE,withinhost=FALSE,fixed.offspring=FALSE,fixed.generations=FALSE,outgroup=TRUE,prob=FALSE,
              N=1000,n.tips=50,sample.reps=5,tree.reps=10, size.reps=c(0),sigma.reps=c(1,5,9,13,18),
              fasta.file=NULL,mu=1e-4,R0=2,Tg=2.6,bs=TRUE,random=FALSE, oldestboolean=TRUE,
              network.path=network,discretised=FALSE,proportional=FALSE)

BEAST_R0_Full(dir="C:/Users/Oliver/Google Drive/Academic Work/Imperial/O15-12/Write Ups/Data/WH_O/",
              t.cont=TRUE,withinhost=TRUE,fixed.offspring=FALSE,fixed.generations=FALSE,outgroup=TRUE,prob=FALSE,
              N=1000,n.tips=50,sample.reps=5,tree.reps=10, size.reps=c(0,10,1,0.1),sigma.reps=c(1,5,9,13,18),
              fasta.file=NULL,mu=1e-4,R0=2,Tg=2.6,bs=TRUE,random=FALSE, oldestboolean=TRUE,
              network.path=network,discretised=FALSE,proportional=FALSE)